Implement visualizations and fix mypy errors #114

codegen-sh · 2025-05-14T01:07:19Z

This PR implements visualization capabilities for call graphs and dead code analysis, and fixes mypy errors in the codebase.

Features Added

Call graph visualization with three visualizers:
- CallGraphFromNode: Creates a directed call graph from a specified function
- CallGraphFilter: Filters call graphs to show only specific methods (e.g., HTTP methods)
- CallPathsBetweenNodes: Visualizes all paths between two specified functions
Dead code visualization with DeadCodeVisualizer
Example script showing how to use the visualizers
Updated README with documentation for the visualization features

Fixes

Added type annotation for graph in __init__.py
Fixed the path parameter in DiffLite.from_git_diff() to ensure it's never None
Added proper type annotations in issues.py for all variables flagged by mypy
Fixed category parameter handling in create_issue()
Fixed DiDegreeView operator issues in graph/__init__.py by explicitly converting to int

This PR replaces PR #111 and #113 with all the fixes for the mypy errors.

💻 View my work • About Codegen

Summary by Sourcery

Implement call graph and dead code visualizations and resolve mypy errors across the codebase

New Features:

Add CallGraphFromNode, CallGraphFilter, and CallPathsBetweenNodes visualizers for function call tracing
Introduce DeadCodeVisualizer to detect and visualize unused functions and their dependencies
Provide example scripts demonstrating visualization features

Bug Fixes:

Fix mypy errors by adding missing type annotations and ensuring non-null paths in DiffLite
Correct parameter handling in DiffLite, issue creation, and group-by methods to satisfy static typing
Resolve graph utility issues by converting degree values to int and handling missing edges

Enhancements:

Refactor graph context utilities to unify hub and cycle detection with warnings
Standardize ChangeType enum values and expand DiffLite to include new and old content fields
Improve type safety in issue management by declaring explicit filter and grouping types

Documentation:

Revise README to focus on visualization features, installation steps, and usage examples
Add examples/visualization_examples.py to illustrate call graph and dead code workflows

# Motivation The **Codegen on OSS** package provides a pipeline that: - **Collects repository URLs** from different sources (e.g., CSV files or GitHub searches). - **Parses repositories** using the codegen tool. - **Profiles performance** and logs metrics for each parsing run. - **Logs errors** to help pinpoint parsing failures or performance bottlenecks.  # Content  see [codegen-on-oss/README.md](https://github.com/codegen-sh/codegen-sdk/blob/acfe3dc07b65670af33b977fa1e7bc8627fd714e/codegen-on-oss/README.md) # Testing  `uv run modal run modal_run.py` No unit tests yet 😿 # Please check the following before marking your PR as ready for review - [ ] I have added tests for my changes - [x] I have updated the documentation or added new documentation as needed

…napshots

Original commit by Tawsif Kamal: Revert "Revert "Adding Schema for Tool Outputs"" (codegen-sh#894) Reverts codegen-sh#892 --------- Co-authored-by: Rushil Patel <[email protected]> Co-authored-by: rushilpatel0 <[email protected]>

Original commit by Ellen Agarwal: fix: Workaround for relace not adding newlines (codegen-sh#907)

…tions

korbit-ai · 2025-05-14T01:07:24Z

By default, I don't review pull requests opened by bots. If you would like me to review this pull request anyway, you can request a review via the /korbit-review command in a comment.

sourcery-ai · 2025-05-14T01:07:24Z

Reviewer's Guide

This PR extends the codebase with comprehensive visualization support for call graphs and dead-code analysis (via new CodebaseVisualizer subclasses that recursively traverse function calls into NetworkX graphs), reorganizes and documents usage in the README and examples, and systematically resolves mypy errors by refining type annotations and refactoring key modules.

File-Level Changes

Change	Details	Files
Documentation rework and examples for visualization	Reorganized README into concise sections (Features, Installation, Usage, Contributing, License) Added `examples/visualization_examples.py` to demonstrate all visualizers Exported new visualizer classes in `visualizers/__init__.py`	`README.md` `examples/visualization_examples.py` `codegen_on_oss/visualizers/__init__.py`
Refactor graph utilities with type safety and logging	Simplified `build_dependency_graph` with explicit type hints and added warnings for missing edges Removed legacy functions and introduced `find_hubs` and `find_cycles` with explicit int conversions Streamlined module docstring and imports	`codegen_on_oss/analyzers/context/graph/__init__.py`
Enhance DiffLite and change-type handling	Switched `ChangeType` to a string-based Enum with UNKNOWN fallback Merged and refactored factory methods to ensure non-null paths Added `new_content` buffer, default bytes for old/new, and Optional annotations	`codegen_on_oss/analyzers/diff_lite.py`
Mypy and typing fixes in issues module	Added explicit type annotations for internal dicts and filters list Inserted `# type: ignore` for related_symbols/locations fields Handled empty category by defaulting to None in `create_issue`	`codegen_on_oss/analyzers/issues.py`
Implement visualization classes	Introduced `CodebaseVisualizer` ABC as common base Created `CallGraphFromNode`, `CallGraphFilter`, `CallPathsBetweenNodes` with recursive traversal logic Added `DeadCodeVisualizer` to detect and display unused functions	`codegen_on_oss/visualizers/call_graph_from_node.py` `codegen_on_oss/visualizers/dead_code.py` `codegen_on_oss/visualizers/codebase_visualizer.py`

Tips and commands

Interacting with Sourcery

Trigger a new review: Comment @sourcery-ai review on the pull request.
Continue discussions: Reply directly to Sourcery's review comments.
Generate a GitHub issue from a review comment: Ask Sourcery to create an
issue from a review comment by replying to it. You can also reply to a
review comment with @sourcery-ai issue to create an issue from it.
Generate a pull request title: Write @sourcery-ai anywhere in the pull
request title to generate a title at any time. You can also comment
@sourcery-ai title on the pull request to (re-)generate the title at any time.
Generate a pull request summary: Write @sourcery-ai summary anywhere in
the pull request body to generate a PR summary at any time exactly where you
want it. You can also comment @sourcery-ai summary on the pull request to
(re-)generate the summary at any time.
Generate reviewer's guide: Comment @sourcery-ai guide on the pull
request to (re-)generate the reviewer's guide at any time.
Resolve all Sourcery comments: Comment @sourcery-ai resolve on the
pull request to resolve all Sourcery comments. Useful if you've already
addressed all the comments and don't want to see them anymore.
Dismiss all Sourcery reviews: Comment @sourcery-ai dismiss on the pull
request to dismiss all existing Sourcery reviews. Especially useful if you
want to start fresh with a new review - don't forget to comment
@sourcery-ai review to trigger a new review!

Customizing Your Experience

Access your dashboard to:

Enable or disable review features such as the Sourcery-generated pull request
summary, the reviewer's guide, and others.
Change the review language.
Add, remove or edit custom review instructions.
Adjust other review settings.

Getting Help

Contact our support team for questions or feedback.
Visit our documentation for detailed guides and information.
Keep in touch with the Sourcery team by following us on X/Twitter, LinkedIn or GitHub.

coderabbitai · 2025-05-14T01:07:27Z

Important

Review skipped

Bot user detected.

To trigger a single review, invoke the @coderabbitai review command.

You can disable this status message by setting the reviews.review_status to false in the CodeRabbit configuration file.

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

Review comments: Directly reply to a review comment made by CodeRabbit. Example:
- I pushed a fix in commit <commit_id>, please review it.
- Explain this complex logic.
- Open a follow-up GitHub issue for this discussion.
Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
- @coderabbitai explain this code block.
- @coderabbitai modularize this function.
PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
- @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
- @coderabbitai read src/utils.ts and explain its main purpose.
- @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
- @coderabbitai help me debug CodeRabbit configuration file.

Support

Need help? Join our Discord community for assistance with any issues or questions.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

@coderabbitai pause to pause the reviews on a PR.
@coderabbitai resume to resume the paused reviews.
@coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
@coderabbitai full review to do a full review from scratch and review all the files again.
@coderabbitai summary to regenerate the summary of the PR.
@coderabbitai generate sequence diagram to generate a sequence diagram of the changes in this PR.
@coderabbitai resolve resolve all the CodeRabbit review comments.
@coderabbitai configuration to show the current CodeRabbit configuration for the repository.
@coderabbitai help to get help.

Other keywords and placeholders

Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (`.coderabbit.yaml`)

You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
Please see the configuration documentation for more information.
If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

Visit our Documentation for detailed information on how to use CodeRabbit.
Join our Discord Community to get help, request features, and share feedback.
Follow us on X/Twitter for updates and announcements.

codegen-sh · 2025-05-14T01:08:12Z

Hey! 👋 I see one of the checks failed. I am on it! 🫡

💻 View my work

codegen-sh · 2025-05-14T01:19:05Z

✅ Fixed the failing mypy and pre-commit checks in PR #114. I made the following changes:

In diff_lite.py:
- Added the missing from_watch_change_type method to the ChangeType class
- Fixed the type handling in from_git_diff to handle None values properly
In issues.py:
- Removed unnecessary type ignore comments
- Fixed type handling in the create_issue function
- Added proper type annotations for dictionary values
In graph/__init__.py:
- Fixed import statements to use modern Python typing syntax
- Fixed formatting issues

The changes have been pushed to the PR branch. The checks should now pass successfully.

💻 View my work • React 👍 or 👎

clee-codegen and others added 30 commits February 26, 2025 23:54

convert to modal.Dict snapshot manager

4177e08

fix: implement modified swebench harness evaluation

b5f1828

Automated pre-commit update

a54c71d

base_commit -> environment_setup_commit

cdcf2d0

add: integrate with postgresql output

7209e5d

Automated pre-commit update

74a019c

Merge branch 'develop' into swebench-sandbox-snapshots

1201832

wip: integration

46171bf

fix: integration with modal deployments

45eb835

wip: initial refactor

7a3b415

fix: refactor run to complete

01236e5

Merge remote-tracking branch 'origin/develop' into swebench-sandbox-s…

cae9518

…napshots

wip: merge changes from run_eval develop

583dd10

add: coarse retries for agent run

60fed54

fix: limit agent modal function concurrency

260d5bc

fix: post-merge bugs

c8cbde9

Merge branch 'develop' into swebench-sandbox-snapshots

5e4b244

Merge branch 'develop' into swebench-sandbox-snapshots

65dd98b

Merge branch 'develop' into swebench-sandbox-snapshots

60177ab

Merge remote-tracking branch 'origin/develop' into swebench-sandbox-s…

e3bcd4e

…napshots

fix: end-to-end to metrics

45993ab

Merge remote-tracking branch 'origin/develop' into swebench-sandbox-s…

bfb7089

…napshots

Update local_run.ipynb

091228a

Update data.py

705853a

Update tracer.py

31c0c30

Update graph.py

c4339c4

Update graph.py

aed3fe0

Apply changes from commit 046b238

2981829

Original commit by Tawsif Kamal: Revert "Revert "Adding Schema for Tool Outputs"" (codegen-sh#894) Reverts codegen-sh#892 --------- Co-authored-by: Rushil Patel <[email protected]> Co-authored-by: rushilpatel0 <[email protected]>

Apply changes from commit 31ca6aa

d76dffe

Original commit by Ellen Agarwal: fix: Workaround for relace not adding newlines (codegen-sh#907)

Codegen Bot and others added 24 commits May 12, 2025 12:46

Fix linting issues

39ed706

Fix remaining linting issues

e64c662

Fix complexity and unused import issues

9ec1f69

Fix linting issues in parser.py by removing unused imports

91a058e

Fix pre-commit issues in transaction_manager.py and transactions.py

1b03616

Fix remaining linting issues

227a617

Fix linting issues in analyzer.py

f905546

Fix remaining linting issues

e8d3a87

Fix remaining linting issues

e9a7be6

Fix remaining linting issues

cec7f42

Fix parameter shadowing builtin 'format'

2edfdad

Fix parameter shadowing builtin 'format' in api.py

dd7a469

Fix remaining parameter shadowing issues in api.py

f99fa22

Fix remaining parameter shadowing issues in api.py

45ed4ef

Fix remaining parameter shadowing issues in api.py

f0c6345

Fix TRY003 issues in api.py

150d5f1

Fix linting issues in MDX docs generation files

6d00b7b

Resolve merge conflict in __init__.py

fe1ba9b

Resolve merge conflicts

a21f0a0

Fix mypy issues in parser.py by implementing missing classes and func…

413c3ef

…tions

Merge PR #107: Implement transaction_manager.py in analyzers directory

4a4b8d8

Resolve merge conflicts

578e6cf

Merge pull request #110 from Zeeeepa/merge-pr-108

f21f590

Implement visualizations and fix mypy errors

d93b949

Zeeeepa force-pushed the develop branch from 67d323c to 3761b6c Compare June 12, 2025 08:54

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Uh oh!

Implement visualizations and fix mypy errors #114

Implement visualizations and fix mypy errors #114

Uh oh!

codegen-sh bot commented May 14, 2025 •

edited by sourcery-ai bot

Loading

Uh oh!

korbit-ai bot commented May 14, 2025

Uh oh!

sourcery-ai bot commented May 14, 2025 •

edited

Loading

Interacting with Sourcery

Customizing Your Experience

Getting Help

Uh oh!

coderabbitai bot commented May 14, 2025

Review skipped

Chat

Support

CodeRabbit Commands (Invoked using PR comments)

Other keywords and placeholders

CodeRabbit Configuration File (`.coderabbit.yaml`)

Documentation and Community

Uh oh!

codegen-sh bot commented May 14, 2025

Uh oh!

codegen-sh bot commented May 14, 2025

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

3 participants

Implement visualizations and fix mypy errors #114

Are you sure you want to change the base?

Implement visualizations and fix mypy errors #114

Uh oh!

Conversation

codegen-sh bot commented May 14, 2025 • edited by sourcery-ai bot Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Features Added

Fixes

Summary by Sourcery

Uh oh!

korbit-ai bot commented May 14, 2025

Uh oh!

sourcery-ai bot commented May 14, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Reviewer's Guide

File-Level Changes

Interacting with Sourcery

Customizing Your Experience

Getting Help

Uh oh!

coderabbitai bot commented May 14, 2025

Review skipped

Chat

Support

CodeRabbit Commands (Invoked using PR comments)

Other keywords and placeholders

CodeRabbit Configuration File (.coderabbit.yaml)

Documentation and Community

Uh oh!

codegen-sh bot commented May 14, 2025

Uh oh!

codegen-sh bot commented May 14, 2025

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

3 participants

codegen-sh bot commented May 14, 2025 •

edited by sourcery-ai bot

Loading

sourcery-ai bot commented May 14, 2025 •

edited

Loading

CodeRabbit Configuration File (`.coderabbit.yaml`)